Release

IQ-TREE version 1.1.3

Nov 5, 2014

  • Support FreeRate model for site rate heterogeneity (Experimental).
  • Added -mset option to restrict model selection to models supported by RAxML (-mset raxml), MrBayes (-mset mrbayes), or Phyml/PartitionFinder (-mset phyml, -mset partitionfinder).
  • Fix bug concerning removal of identical sequences.
  • Fix bug concerning +I model (+G and +I+G were not affected).
Download version 1.1.3 from GitHub

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Recent publications

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Jan 1, 2018

ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates

May 8, 2017

Dominik's paper accepted at Journal of Theoretical Biology

Jun 29, 2016

Olga's paper accepted at Systematic Biology

Apr 15, 2016

Jana's paper accepted at Nucleic Acids Research

Apr 2, 2016

Olga's paper accepted at Journal of Computational Biology

Aug 29, 2015

Recent announcements

Code of Conduct

May 17, 2021

Parallel IQ-TREE MPI pre-release

Aug 22, 2016

IQ-TREE Heterotachy pre-release

Aug 12, 2016

New IQ-TREE web site

Nov 19, 2015

Recent PhD dissertations

Tung's PhD defense

Mar 7, 2016

Olga's PhD defense

Dec 17, 2015

Recent opinions

Should the rate variation across sites be Gamma?

Sep 26, 2017

IQTree vs RAxML for phylogenetic tree construction

Feb 12, 2016

Recent phd positions

PhD position in phylogenomic inference

Dec 12, 2019

Software

Release notes
GitHub repository
Development team

User support

Frequently asked questions
User documentation
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Links

ANU School of Computing
Computational Phylogenomics Lab
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